Neuroscience Radar

2026-09-30

New bioRxiv neuroscience preprints, filtered for computational and systems work.

70papers read
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4shortlisted
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2must-read

30 s · 64,219 input tokens · ≈ $0.0027 · jev-1.13.0 via typesafe

Must-read ≥ 95%

95%new methodbiorxiv

Theta sweeps accelerate cognitive map learning by broadcasting information to unvisited regions

CHU, T., HE, J., JI, Z. et al. · neuroscience

Computational models 95%Neural coding 55%
Abstract

To support flexible behavior, animals need to learn map like representations of environments from limited experiences, but the underlying neural mechanisms remain unclear. Here, we propose that theta sweeps, a prominent feature in the activities of grid and place cells during active movement, can broadcast acquired sensory information to swept unvisited regions, accelerating cognitive map learning. To test this idea, we built a network of direction, grid, and place cell modules, in which theta modulation and firing rate adaptation generate theta sweeps, while Hebbian plasticity enables place cells to bind environmental observations. Simulations and ablations showed that the dorsal ventral grid organization produces multiscale, independent sweeps broadcasting acquired sensory information to a broad, fan shaped unvisited area, enabling unvisited regions to build place environment associations. The model further suggests that declining theta power as the environment becomes familiar acts as an annealing process, shifting from learning general information about the environment to making local refinements. The model makes three testable predictions: strong theta modulation accelerates early learning, environments with broader spatial correlations favor longer theta sweeps, and theta sweeps progressively shorten as environments become familiar. Together, our results support theta sweeps as a mechanism for accelerating cognitive map learning from limited explorations, and it sheds light on developing brain inspired algorithms for building world models.

biorxiv:10.64898/2026.09.26.754738Useful?👍👎
95%new methodbiorxiv

A systems-level model of sleep-dependent memory-consolidation failure in neurodegeneration: the spindle-slow-oscillation decoupling cascade dissociates amyloid and tau

Masry, M. B., Shahin, A., Malek, Z. · neuroscience

Computational models 95%
Abstract

During non-rapid-eye-movement (NREM) sleep, the temporal coupling of cortical slow oscillations (SOs), thalamic spindles, and hippocampal sharp wave ripples drives the consolidation of declarative memories. This coupling degrades in ageing and Alzheimers disease (AD), and although A{beta} and tau leave dissociable signatures in human sleep, the mechanisms by which progressive pathology dismantles the consolidation machinery are difficult to isolate experimentally, and have not to our knowledge been reproduced in a model that can be perturbed directly. We built a systems-level model in which cortical SOs and thalamic spindles are generated by reduced oscillators, hippocampal ripples replay encoded spike sequences, and the measured per-event SO-spindle timing alignment causally gates spike-timing dependent plasticity on cortical sequence synapses. A post-sleep cued-recall test reads out consolidation. Five neurodegeneration parameters (amyloid, tau, synaptic density, GABAergic inhibition, cholinergic tone) map to dis tinct mechanisms grounded in the human and animal literature. The model reproduces graded healthy consolidation and a progressive collapse in which coupling, slow-wave power, spindle power and recall fall monotonically and the overnight memory effect flips from consolidation to net forgetting, with weak memories failing first. Scrambling SO-spindle timing while holding oscillation power fixed abolishes consolidation, establishing that coupling timing, rather than oscillation power, is what the plasticity gate depends on within the model. A{beta} and tau impair memory through orthogonal signatures (A{beta} collapses slow-wave power while sparing replay order, tau the reverse) and this orthogonality holds across the entire A{beta} x tau plane and survives simultaneous {+/-}50% resampling of every mapping coefficient (40/40 samples), so it is not an artefact of a single calibration point. The model yields a falsifiable clinical prediction: closed-loop slow-oscillation enhancement rescues memory only when the deficit is amplitude/coupling-dominated, not when it is replay(tau)-dominated, despite normalising slow-wave power in both cases. Because the therapy arms dissociate coupling from memory benefit, the model also cautions against adopting SO-spindle coupling as a standalone surrogate endpoint.

biorxiv:10.64898/2026.09.21.753161Useful?👍👎

Maybe 90% to 95%

94%new methodbiorxiv

Generation mechanisms and species-specific properties of parkinsonian beta oscillations in the basal ganglia

Nicollin, E., Deffains, M., Mallet, N. P. et al. · neuroscience

Computational models 94%
Abstract

The basal ganglia (BG), thalamus and cortex form the BG-thalamo-cortical (BGTC) network, which is essential for voluntary movement and centrally involved in Parkinson's disease (PD). In both patients and animal models, BG neuronal activity exhibits exaggerated oscillatory synchronization in the beta frequencies (13-30 Hz). Theoretical studies have proposed multiple network mechanisms for the generation of these abnormal beta oscillations. However, key properties, such as frequency and power distribution across BG nuclei, vary substantially among patients and between animal models (rodents vs. non-human primates). This variability complicates direct comparisons between theoretical models and experimental data, and questions whether distinct neuronal mechanisms may underlie beta oscillations across species. In an experimentally constrained BGTC network model with species-specific parameters (synaptic, neuronal, and network properties), we evaluate the features of abnormal beta oscillatory activity generated by different mechanisms. The network's negative feedback loops serve as potential sources of spontaneous oscillations. Using rodent- or primate-constrained models, we compare the spectral properties of oscillatory activity across network populations for each loop and derive the expected phase relationships between populations to align predictions with existing rodent data and propose testable hypotheses for primates. We also demonstrate how oscillation frequency can be modulated when multiple generation mechanisms interact as coupled oscillators in the full network. Our results, combined with observed cross-species beta oscillations characteristics, suggest that abnormal beta oscillations likely arise from distinct mechanisms in rodents and primates.

biorxiv:10.64898/2026.09.24.753820Useful?👍👎
91%empirical studybiorxiv

The representation of vocalizations in structured noise in the mouse auditory cortex

Cai, Z., Peters, J., Arends, S. et al. · neuroscience

Neural coding 91%
Abstract

Efficient processing of complex acoustic signals within noisy environments is a fundamental challenge for the auditory system. This study investigates the cortical representation of structured noise and vocalizations embedded in it using widefield calcium imaging with the high-speed Calcium indicator jGCaMP8m in the mouse auditory cortex. The spectrotemporal statistics of the structured noise were controllable, including its temporal variance and cross-frequency correlations. We find that structured noise invokes spatially and temporally complex neural responses across the auditory cortex that reflect the spectrotemporal properties of the noise. We identified partially distinct noise response components: noise onset responses showed stronger overlap with primary than secondary areas, while later suppression components did not show a significant primary-secondary bias. Vocalization-evoked responses were significantly attenuated in the presence of noise compared to silent contexts, exhibiting reduced onset magnitude and altered adaptation dynamics. Using decoding we find the neural representation of vocalizations to become more discriminable with longer preceding noise exposure. Furthermore, structured noise cochleograms could be reconstructed from neural population activity, with performance depending on stimulus statistics, tending to be higher in primary than secondary auditory cortex while remaining substantial across both. These findings suggest that the mouse auditory cortex represents acoustic targets in noise through context-dependent and spatially distributed population activity, shaped by both the statistical structure and temporal history of the acoustic background.

biorxiv:10.64898/2026.09.28.753104Useful?👍👎